A Dane Goes to NASA

Last year, Nis Wegmann came from the University of Copenhagen to work with me on a NASA-sponsored project.  He was recently interviewed about his experiences.

Nis worked at the National Institute of Aerospace in Virginia, just outside the NASA Langley gates.  Since Galois is on the other side of the U.S., we mostly collaborated remotely.  (For a taste of what its like to intern at Galois itself, check out Ed Yang’s post.)  Nis is an outstanding programmer and great writer, so it made working together effortless, despite the distance.

Good luck in your future endeavors, Nis!


The Worst Offenders

I listened to a Freakonomics podcast the other day in which a story about hand-washing at Cedars-Sinai Medical Center was told. It turns out that of all the staff, the doctors had the lowest rate of hand-washing (around 65%, if I recall correctly) in the hospital. This was surprising, since the doctors supposedly have the best education and so should know the most about the dangers of bacterial infection.

The chief of the staff tried different means to increase hygiene. Incentives like gift cards were tried. Then he tried another approach: shame. Doctors had their hands cultured so that they could see the bacteria on their hands. Images of the cultures were even used as a hospital-wide screensaver on the computers.

I listened to this wondering if there are any parallels to formal verification engineers and researchers. Ostensibly, we are the experts on the perils of software bugs. Academic papers often begin with some story about bugs in the wild, motivating the new formal verification technique described therein.

But to what extent do we practice what we preach? How many of us might write a Python script with no unit tests? C/C++ programs without running Lint/CppCheck? Compile without fixing all the -Wall warnings the compiler emits?

These kinds of activities represent the lowest rung of software assurance; they’re the “hand washing of software assurance”, if you will. I’m certainly guilty myself of not always practicing good “software hygiene”. The justifications you might give for failing to do so is that you’re just writing a program for personal use, or you’re writing prototype software, “just for research”. I could imagine doctors telling themselves something similar: “I always scrub thoroughly before a major surgery, but it’s not such a big deal for a simple office visit.” But this justification can become a slippery slope.

There are a few examples in which verification-tool assurance shoots straight for the top. For example, John Harrison verified a model of HOL Light in HOL Light. Filip Maríc verified a SAT solver. But these are more intellectual curiosities than standard operating procedure.

It could be an interesting empirical study to analyze the software quality of open-source formal verification tools to see just how buggy they are (spoiler alert: they are buggy). What I’m interested in are not deep flaws that might be caught via theorem-proving, but simple ones that could be caught with a little better test coverage or lightweight static analysis.

For now, I’m just happy my colleagues’ screensaver isn’t a bug tracker for software that I’ve written.


Lowering the Bar

I gave a talk (video, slides, and paper) at ICFP last month, arguing that it can be easy to build a high-assurance compiler. I gave a similar talk as a keynote a couple weeks later at the very enjoyable Midwest Verification Day, hosted by Kansas University this year (thanks Andy Gill and Perry Alexander for inviting me!). This paper wraps up the Copilot project. I had a great time (I mean, how often do formal methods engineers get to be around NASA subscale jet aircraft?!?).


SmartCheck

I’ve been working on a Haskell library for testing Haskell programs I call SmartCheck. SmartCheck is focused on testing algebraic data and generalizing counterexamples found. Below is the README for SmartCheck, which I have located on GitHub (I haven’t put it on Hackage yet). The following is a high-level explanation that doesn’t go into details about the algorithms or implementation (that’s another post!).

I’d be interested in feedback on

  • Real-world examples to try SmartCheck on.
  • Whether there are other interesting ways to generalize counterexamples.
  • If there’s similar work out there I should know about (in addition to QuickCheck and SmallCheck.
  • Your experiences, if you try the library out.

Thanks!


Synopsis

SmartCheck is a smarter QuickCheck, a powerful testing library for Haskell. The purpose of SmartCheck is to help you more quickly get to the heart of a bug and to quickly discover each possible way that a property may fail.

SmartCheck is useful for debugging programs operating on algebraic datatypes. When a property is true, SmartCheck is just like QuickCheck (SmartCheck uses QuickCheck as a backend). When a property fails, SmartCheck kicks into gear. First, it attempts to find a minimal counterexample to the property is a robust, systematic way. (You do not need to define any custom shrink instances, like with QuickCheck, but if you do, those are used. SmartCheck usually can do much better than even custom shrink instances.) Second, once a minimal counterexample is found, SmartCheck then attempts to generalize the failed value d by replacing d‘s substructures with new values to make d', and QuickChecking each new d'. If for each new d' generated, the property also fails, we claim the property fails for any substructure replaced here (of course, this is true modulo the coverage of the tests).

SmartCheck executes in a real-eval-print loop. In each iteration, all values that have the “same shape” as the generalized value are removed from possible created tests. The loop can be iterated until a fixed-point is reached, and SmartCheck is not able to create any new values that fail the property.

A typical example

In the package there is an examples directory containing a number of examples. Let’s look at the simplest, Div0.hs.

> cd SmartCheck/examples
> ghci -Wall Div0.hs

Div0 defines a toy language containing constants (C), addition (A), and division (D):

data M = C Int
       | A M M
       | D M M
  deriving (Read, Show, Typeable, Generic)

Because SmartCheck performs data-generic operations using GHC.Generics we have to derive Typeable and Generic. To use GHC.Generics, you also need the following pragmas: and the single automatically-derived instance:

{-# LANGUAGE DeriveDataTypeable #-}
{-# LANGUAGE DeriveGeneric #-}

instance SubTypes M 

Let’s say we have a little interpreter for the language that takes care to return Nothing if there is a division by 0:

eval :: M -> Maybe Int
eval (C i) = Just i
eval (A a b) = do
  i <- eval a 
  j <- eval b
  return $ i + j
eval (D a b) = 
  if eval b == Just 0 then Nothing 
    else do i <- eval a 
            j <- eval b
            return $ i `div` j

Now suppose we define a set of values of M such that they won’t result in division by 0. We might try the following:

divSubTerms :: M -> Bool
divSubTerms (C _)       = True
divSubTerms (D _ (C 0)) = False
divSubTerms (A m0 m1)   = divSubTerms m0 && divSubTerms m1
divSubTerms (D m0 m1)   = divSubTerms m0 && divSubTerms m1

So our property (tries) to state that so long as a value satisfies divSubTerms, then we won’t have division by 0 (can you spot the problem in divSubTerms?):

div_prop :: M -> Property
div_prop m = divSubTerms m ==> eval m /= Nothing

Assuming we’ve defined an Arbitrary instance for M (just like in QuickCheck—however, we just have to implement the arbitrary method; the shrink method is superfluous), we are ready to run SmartCheck.

divTest :: IO ()
divTest = smartCheck args div_prop
  where 
  args = scStdArgs { qcArgs   = stdArgs 
                   , treeShow = PrintString }

In this example, we won’t redefine any of QuickCheck’s standard arguments, but it’s certainly possible. the treeShow field tells SmartCheck whether you want generalized counterexamples shown in a tree format or printed as a long string (the default is the tree format).

Ok, let’s try it. First, SmartCheck just runs QuickCheck:

*Div0> divTest 
*** Failed! Falsifiable (after 7 tests):
D (D (D (A (C (-20)) (D (D (C 2) (C (-19))) (C (-8)))) (D (D (C (-23)) (C 32)) (C (-7)))) (A (A (C 2) (C 10)) (A (C (-2)) (C 13)))) (D (A (C 12) (C (-7))) (D (A (C (-29)) (C 19)) (C 30)))

Oh, that’s confusing, and for such a simple property and small datatype! SmartCheck takes the output from QuickCheck and tries systematic shrinking for the one failed test-case, kind of like SmallCheck might. We get the following reduced counterexample:

*** Smart Shrinking ... 
*** Smart-shrunk value:
D (C 0) (D (C 0) (C (-1)))

Ok, that’s some progress! Now SmartCheck attempts to generalize this (local) minimal counterexample. SmartCheck has two generalization steps that we’ll explain separately although SmartCheck combines their results in practice (you can turn off each kind of generalization in the flags). First, SmartCheck tries to generalize values in the shrunk counterexample. SmartCheck returns

*** Extrapolating values ...
*** Extrapolated value:
forall x0:

D x0 (D (C 0) (C (-1)))

Ahah! We see that for any possible subvalues x0, the above value fails. Our precondition divSubTerms did not account for the possibility of a non-terminal divisor evaluating to 0; we only pattern-matched on constants.

In addition, SmartCheck tries to do something I call constructor generalization. For a datatype with a finite number of constructors, the idea is to see if for each subvalue in the counterexample, there is are subvalues that also fail the property, using every possible constructor in the datatype. So for example, for our counterexample above

*** Extrapolating constructors ...
*** Extrapolated value:
forall C0:
  there exist arguments s.t.

D (C 0) (D C0 (C (-1)))

So in the hole C0, SmartCheck was able to build a value using each of the constructors C, A, and D (well, it already knew there was a value using CC 0.

SmartCheck asks us if we want to continue:

Attempt to find a new counterexample? ('Enter' to continue; any character
then 'Enter' to quit.)

SmartCheck will omit any term that has the “same shape” as D (C 0) (D (C 0) (C (-1))) and try to find a new counterexample.

*** Failed! Falsifiable (after 9 tests):  
A (A (D (C (-20)) (A (C (-5)) (C (-32)))) (D (A (C 6) (C 19)) (A (C (-3)) (A (C (-16)) (C (-13)))))) (D (C 29) (D (C (-11)) (D (C 11) (C 23))))

*** Smart Shrinking ... 
*** Smart-shrunk value:
A (C (-1)) (D (A (C 1) (C 1)) (D (C 1) (C 2)))

*** Extrapolating values ...

*** Extrapolating Constructors ...

*** Extrapolated value:
forall values x0 x1:

A x1 (D x0 (D (C 1) (C 2)))

We find another counterexample; this time, the main constructor is addition.

We might ask SmartCheck to find another counterexample:

...

*** Extrapolating ...
*** Could not extrapolate a new value; done.

At this point, SmartCheck can’t find a newly-shaped counterexample. (This doesn’t mean there aren’t more—you can try to increase the standard arguments to QuickCheck to allow more failed test before giving up (maxDiscard) or increasing the size of tests (maxSize). Or you could simply just keep running the real-eval-print loop.)


A Fistful of Dollars

A while back I attended an excellent DARPA Proposers’ Day. It got me thinking, “If I had a fistful of (a few million) dollars to provide researchers, what sort of program might I start?” Two ideas struck me:

Getting software right, fast

Software is usually developed in a world with incomplete requirements and with users (and attackers) that try to break your assumptions.  Furthermore, more often than not, developers themselves (perhaps with a QA team, if they’re lucky) largely decide when they’re “done”—when a version is bug-free enough, secure enough, and meets the specifications to release.

There are a dizzying number of approaches to improving quality: testing (e.g., unit testing, penetration testing, black-box and white-box testing), compiler tools (e.g., type-checking, warnings), formal verification (e.g., model-checking, static analysis, decision procedures), programming methodologies (e.g., pair-programming, extreme programming), etc.  The question is, what combinations of approaches provide benefits and by what factor?

A major portion of the challenge would be to fund experiments that are large enough to draw statistical conclusions about different approaches.  Teams would get points for finishing faster, but lose points for bugs, security vulnerabilities, unimplemented features, etc. uncovered by a separate “read team”.  To make the experience more realistic, I’d have career programmers (not students in an undergrad course) to participate in the experiments.  A major portion of the program would be just designing the experiments to ensure statistical conclusions could be drawn from them, but I imagine the results might be enlightening.

A Believe Search Engine

Imagine a “search” engine in which you could search not for facts, but beliefs.  For example, I might query the likelihood that someone believes that the Earth revolves around the Sun in Russia in 1600.  Or I might ask what the likelihood of someone believing in global warming in Japan in 2012.  Or whatever else.  The engine would return some probability, perhaps with a confidence interval.  I’d imagine being able to query some believe based on geography, time period, religion, nationality, sex, and so forth.  Of course this is a hard, hard problem, and would likely involve search as well technology akin to IBM’s Watson.  I’d be curious to know if it were feasible at all.


When Formal Systems Kill

What happens when a philosophy professor (with a M.S. in Computer Science) and a formal methods engineer (like me) collaborate?  The outcome in my case is a paper entitled, “When Formal Systems Kill: Computer Ethics and Formal Methods” (pdf). In the paper, we give an ethical treatment of the use of formal methods. Our goal in the paper is not so much to make definitive claims on the subject but to raise awareness of the issue for further philosophical treatment. The subject has been neglected by ethics philosophers.

Darren (my coauthor) and I had a hard time deciding where to try to publish this. We ended up submitting it to the American Philosophical Association’s (APA) newsletter on Philosophy and Computers, where it was accepted for the Fall 2011 edition. (The APA is the “ACM of Philosophy” within the United States.)

The paper was a number of years in the making, being a side-project for me. I can’t say I agree with everything we wrote, but I hope it serves as a useful starting point for the dialogue between ethics and formal methods.


Who’s Afraid of Software?

Who’s afraid of software?  I mean viscerally, stomach-knotting afraid.  Afraid like you might be when you come across a snake or a bear, or when you are mugged.  Do you obsess about a phishing attack each time you open your email?  Do you worry there’s an eavesdropper when you join the open wifi access point in a coffee shop?  Do you worry your software will fail in your modern automobile or aircraft?

I listened to a Freakonomics podcast about risk, uncertainty, and beliefs.  One point made during the show was that our fears are shaped by evolution—to our ancestors, it made sense to be afraid of threatening animals.  In modern life, however, our fears don’t match risks—we’d be much better off being afraid of cheeseburgers, as pointed out in the show.  Some people are afraid of modern risks.  I know people afraid of cancer, for example.

That got me thinking about fearing software.  Software is certainly among the most complex artifacts created by humans.  Modern cars contain 100+ million lines of code.  Nearly every day there is a story about a large corporation being hacked and of cyber-warfare between nations.

My question is serious—I really do wonder if people are genuinely afraid of software.  I work in the area of software assurance, and while I take precautions against viruses, phishing attacks, etc., I don’t particularly worry about software failures, even when my life might depend on it.  This is despite issues just last year like this and this in automotive software.  I get to see a somewhat how the sausage is made, and in general, we only exercise a small fraction of the state-space of deployed software in validation and in actual usage.  There are legitimate risks, but there seems to be very little fear.

Perhaps like a medical doctors stereotypically neglecting their own health, I don’t worry day-to-day about software assurance despite working in the field.  But it seems nobody else really fears software, either.

In the podcast, the topic of polarizing claims, like global warming, is discussed.  Outside of academic circles, one’s view on the risks of software are not so polarizing—your views on the topic won’t cause your friends or colleagues to disparage you (indeed, if anything, the main risk is likely boring others in discussing the topic!).  I wonder just what the “global warming” of software might be in the future.


Copilot featured in Aerospace America

My Copilot project, sponsored by NASA, was featured in the Aerospace America magazine “Year in Review” edition (December 2011). We recently finished up the project, which focused on solving the problem of failure in complex embedded systems (like flight control systems in commercial aircraft).  Our approach was a language called Copilot for runtime monitoring of embedded systems corroborated with experiments on airspeed sensor systems and an autopilot communication link.

Here’s a link to the page from the magazine mentioning us from the author’s page. (The relevant paragraph is in the middle of the right column).

Thanks to Galois and the National Institute of Aerospace where the work was done, the NASA folks we collaborated with, and especially Alwyn Goodloe, Nis Wegmann, Sebastian Niller, and Robin Morisset who worked on the project with me.


Stable Names in Haskell

Stable names in GHC “are a way of performing fast (O(1)), not-quite-exact comparison between objects.”  Andy Gill showed how to use them to extract the explicit graph from writing recursive functions in his Data.Reify package (and associated paper).  It’s a great idea and very practical for embedded domain-specific languages—we’ve used the idea in Copilot to recover sharing.

However, consider this example, with three tests executed in GHCI.

For a function with type constraints, stable names fails to “realize” that we are pointing to the same object. As a couple of my colleagues pointed out, the cause is the dictionary being passed around causing new closures to be created. Simon Marlow noted that if you compile with -O, the explicit dictionaries get optimized away.

Here are the solutions I have to “fixing” the problem, in the context of a DSL:

  • Tell your users that recursive expressions must be monomorphic—only “pure functions” over the expressions of your DSL can be polymorphic.
  • Implement a check in your reifier to see how many stable names have been created—if some upper-bound is violated, then the user has created an infinite expression, the expression is extremely large (in which case the user should try to use some sharing mechanism, such as let-expressions inside the language), or we’ve hit a stable-names issue.
  • Ensure your DSL programs are always compiled.
  • Of course, you can always take another approach, like Template Haskell or not using recursion at the Haskell level; also check out Andy Gill’s paper for other solutions to the observable sharing problem.

I don’t see how to use (deep)seq to fix the problem, at least as it’s presented in the example above, but I’d be keen to know if there are other solutions.


FM@Galois Talks

As I posted over on the Galois blog, I recently gave a talk a couple of times on formal methods at Galois over the years (pdf). It’s been fun putting theory into practice!


Making your Ubuntu life better

I’ve had a lot of trouble with Ubuntu 11.04 (Natty Narwhal) on a laptop (ThinkPad 420), and I’ve had problems including:

  • Not being able to use dual monitors,
  • Random logoffs.

I tentatively think I was able to solve them with two easy fixes:

  • Turn off Unity. You can do this in the login screen.
  • In the Update Manager, under “Settings”, check “Proposed updates”.

With the proposed updates, Unity may be working; try that at your own risk. With that, I have a reasonably stable system.


Meta-Programming and eDSLs

I’ve been working on a domain-specific language that is embedded in Haskell (an “eDSL”) that essentially takes a set of Haskell stream (infinite list) equations and turns them into a real-time C program implementing the state-machine defined by the streams. It’s called Copilot, and in fact, it’s built on top of another Haskell eDSL called Atom,1 which actually does the heavy lifting in generating the C code.

For example, here’s the Fibonacci sequence in Copilot:

fib = do let f = varW64 "f" f .= [0,1] ++ f + (drop 1 f) 

I’ve been writing Copilot libraries recently, and I’ve had the following realization about eDSLs and meta-programming (let me know if someone has had this idea already!). Many languages treat meta-programming as a second-class feature—I’m thinking of macros used by the C preprocessor, for example (it’s probably generous even to call the C preprocessor ‘meta-programming’). One reason why Lisp-like languages were exciting is that the language is a first-class datatype, so meta-programming is on par with programming. In my experience, you don’t think twice about meta-programming in Lisp. (Haskell is more like C in this regard—you do think twice before using Template Haskell.)

So languages generally treat meta-programming as either second-class or first-class. What’s interesting about eDSLs, I think, is that they treat meta-programming as first-class, but programming as second-class! This isn’t surprising, since an eDSL is a first-class datatype, but the language is not first-class—its host language is.

Practically, what this means is that you spend very little time actually writing eDSL programs but rather generating eDSL programs. It is natural to layer eDSLs on top of other eDSLs.

This is just how Copilot came about: I was writing various Atom programs and realized that for my purposes, I just needed a restricted set of behaviors provided by Atom that are naturally represented by stream equations (and make some other tasks, like writing an interpreter, easier).

But as soon as Copilot was written, we2 started writing libraries implementing past-time linear temporal logic (LTL) operators, bounded LTL operators, fault-tolerant voting algorithms, regular expressions, and so on.

You wouldn’t think about combining the intermediate languages of a compiler into the same program. The idea of a language is more fluid, more organic in the context of eDSLs, where now libraries can be quickly written and different levels can be easily combined.

1Tom Hawkins wrote Atom.
2Credit for Copilot also goes to Sebastian Niller, Robin Morisset, Alwyn Goodloe.


Haskell and Hardware for the Holidays

Looking to make a statement this holiday season?  You could try to win the office “ugly holiday sweater” contest.  Or, you could play “Jingle Bells” on your Arduino microcontroller, using Haskell.  This post is about the latter.

We’re going to write this small program using the Copilot embedded domain-specific language (on Hackage and the source on Github).  Copilot is a stream language that allows you to generate embedded C code from programs written essentially as Haskell lists (using Atom as a backend for the C code generation).  This post is about how to use Copilot/Haskell (v. 1.0) to make your embedded C programming easier and more likely to be correct.  Here’s what we’re going to do—please don’t look too closely at my soldering, and turn the volume up, since a piezo speaker isn’t loud:

(For the impatient, the Haskell file is here, and the generated .c and .h files are here and here, respectively.)

We’re going to essentially recreate this C/Wiring program, plus flash some LEDs, but hopefully in a easier, safer way.  We need to manage three tasks:

  1. Determine the note and number of beats to play.
  2. Play the piezo speaker.
  3. Flash the LEDs.

We’ll start by defining which pins control what function:

-- pin numbers
speaker, red, green :: Spec Int32
speaker = 13
red     = 12
green   = 11

The type Spec Int32 takes an Int32 and lifts it into a Copilot expression.

We’ll call the program cycleSong. The type of a Copilot program is Streams, which is a collection of Spec a`s, and it resides within the Writer Monad. First, we’ll declare some variables.

cycleSong :: Streams
cycleSong = do
  -- Copilot vars
  let idx       = varI32 "idx"
      notes     = varI32 "notes"
      duration  = varI32 "duration"
      odd       = varI32 "odd"
      even      = varI32 "even"
      playNote  = varB   "playNote"
  -- external vars
      note = extArrI32 "notes" idx
      beat = extArrI32 "beats" idx

There are two classes of variables: Copilot variables that will refer to streams (infinite lists), and external variables, which can refer to data from C (including the return values of functions, global variables, and arrays). The constructors are mnemonics for the type of the variables; for example, varI32 is a variable that will refer to a stream of Int32s. Similarly, extArrI32 is an external variable referring to a C array of Int32s (i.e., int32_t). Notice the idx argument—it is the stream of values from which the index into the array is drawn (constants can also be used for indexes).

Now for the actual program:

 idx      .= [0] ++ (idx + 1) `mod` (fromIntegral $ length notesLst)
 notes    .= note
 duration .= beat * 300
 odd      .= mux (idx `mod` 2 == 1) green red
 even     .= mux (idx `mod` 2 == 1) red green
 playNote .= true
 -- triggers
 trigger playNote "digitalWrite" (odd <> true)
 trigger playNote "digitalWrite" (even <> false)
 trigger playNote "playtone" (speaker <> notes <> duration)

And that’s basically it.  There are two parts to the program, the definition of Copilot streams, which manage data-flow and control, and triggers, which call an external C function when some property is true.  Copilot streams look pretty much like Haskell lists, except that functions are automatically lifted to the stream level for convenience.  Thus, instead of writing,

 x = [0] ++ map (+1) x

in Copilot, you simply write

 x .= [0] ++ x + 1

Similarly for constants, so the Copilot stream definition

playNote .= true

lifts the constant true to an infinite stream of true values. The function mux is if then elsemux refers to a 2-to-1 multiplexer. So that means that the stream odd takes the value of green when idx is odd, and red otherwise, where green and red refer to the pins controlling the respective LEDs.

Just to round out the description of the other defined streams, idx is the index into the C arrays containing the notes and beats, respectively—that’s why we perform modular arithmetic. The stream duration tells us how long to hold a note; 300 is a magic “tempo” constant.

Now for the triggers. Each of our triggers “fires” whenever the stream playNote is true; in our case, because it is a constant stream of trues, this happens on each iteration. So on each iteration, the C functions digitalWrite and playTone are called with the respective function arguments (‘<>‘ separates arguments). The function digitalWrite is a function that is part of the Wiring language, which is basically C with some standard libraries, from which digitalWrite comes. We’ll write playTone ourselves in a second.

The C Code

We need a little C code now.  We could write this directly, but we’ll just do this in Haskell, since there’s so little we need to write—the Copilot program handles most of the work.  But a caveat: it’s a little ugly, since we’re just constructing Haskell strings. Here are a few functions (included with Copilot) to make this easier, and here are some more. (If someone properly writes a package to write ad-hoc C code from Haskell, please leave a comment!)

First, we need more magic constants to give the frequency associated with notes (a space is a rest).

freq :: Char -> Int32
freq note  =
  case note of
    'c' -> 1915
    'd' -> 1700
    'e' -> 1519
         ...

and here are the notes of the song and the beats per note:

jingleBellsNotes = "eeeeeeegcdefffffeeeddedgeeeeeeegcdefffffeeggfdc"
jingleBellsBeats =
  [ 1,1,2  , 1,1,2, 1,1,1,1, 4
  , 1,1,1,1, 1,1,2, 1,1,1,1, 2,2
  , 1,1,2  , 1,1,2, 1,1,1,1, 4
  , 1,1,1,1, 1,1,2, 1,1,1,1, 4
  ]

The other main piece of C code we need to write is the function playtone. The piezo speaker is controlled by pulse width modulation, basically meaning we’ll turn it on and off really fast to simulate an analogue signal. Here is it’s definition (using a little helper Haskell function to construct C functions):

    [ function "void" "playtone" ["int32_t speaker", "int32_t tone", "int32_t duration"] P.++ "{"
    , "#ifdef CBMC"
    , "  for (int32_t i = 0; i < 1; i ++) {"
    , "#else"
    , "  for (int32_t i = 0; i < duration * 1000; i += tone * 2) {"
    , "#endif"
    , "    digitalWrite(speaker, HIGH);"
    , "    delayMicroseconds(tone);"
    , "    digitalWrite(speaker, LOW);"
    , "    delayMicroseconds(tone);"
    , "  }"
    , "}"
    ]

HIGH, LOW, digitalWrite, and delayMicroseconds are all part of the Wiring standard library.  That ifdef is for verification purposes, which we’ll describe in just a bit.

Besides a little more cruft, that’s it!

Test, Build, Verify

“Jersey Shore” may have introduced you to the concept of gym, tan, laundry, but here we’ll stick to test, build, verify.  That is, first we’ll test our program using the Copilot interpreter, then we’ll build it, then we’ll prove the memory safety of the generated C program.

  • Interpret. We define a function that calls the Copilot interpreter:
    interpreter =
      interpret cycleSong 20
        $ setE (emptySM {i32Map = fromList [ ("notes", notesLst)
                                           , ("beats", beatsLst)]})
        baseOpts

    This calls the Copilot interpreter, saying to unroll cycleSong 20 times. Because the Copilot program samples some external C values, we need to provide that data to the interpreter. Fortunately, we have those arrays already defined as Haskell lists. Executing this, we get the following:

    period: 0   duration: 300   even: 11   idx: 0   notes: 1519   odd: 12   playNote: 1
    period: 1   duration: 300   even: 12   idx: 1   notes: 1519   odd: 11   playNote: 1
    period: 2   duration: 600   even: 11   idx: 2   notes: 1519   odd: 12   playNote: 1
    period: 3   duration: 300   even: 12   idx: 3   notes: 1519   odd: 11   playNote: 1
    period: 4   duration: 300   even: 11   idx: 4   notes: 1519   odd: 12   playNote: 1
    period: 5   duration: 600   even: 12   idx: 5   notes: 1519   odd: 11   playNote: 1
    period: 6   duration: 300   even: 11   idx: 6   notes: 1519   odd: 12   playNote: 1
                                                   . . .

    Good, it looks right. (period isn’t a Copilot variable but just keeps track of what round we’re on.)

  • Build. To build, we generate the C code from the Copilot program, then we’ll use a cross-compiler targeting the ATmega328. The easiest way (I’ve found) is via Homin Lee’s Arscons. Arscons is based on Scons, a Python-based build system. Arscons makes three assumptions: (1) the program is written as a Wiring program (e.g., there’s a loop() function instead of a main() function is the main difference), (2) the extension of the Wiring program is .pde, and (3) the directory containing the XXX.pde is XXX. For us, all that really means is that we have to change the extension of the generated program from .c to .pde. So we define
    main :: IO ()
    main = do
      compile cycleSong name
        $ setPP cCode  -- C code for above/below the Copilot program
        $ setV Verbose -- Verbose compilation
        baseOpts
      copyFile (name P.++ ".c") (name P.++ ".pde") -- SConstruct expects .pde

    and then execute

    > runhaskell CopilotSong.hs

    to do this.

    To build the executable, we issue

    > scons

    then

    scons upload

    when we’re ready to flash the microcontroller.

  • Verify. Is the generated C program memory safe?  Wait… What do I mean by ‘memory safe’?  I’ll consider the program to be memory safe if the following hold:
    • No arithmetic underflows or overflows.
    • No floating-point not-a-numbers (NaNs).
    • No division by zero.
    • No array bounds underflows or overflows.
    • No Null pointer dereferences.

    Of course this is an approximates memory-safety, but it’s a pretty good start. If the compiler is built correctly, we should be pretty close to a memory-safe program. But we want to check the compiler, even though Haskell’s type system gives us some evidence of guarantees already. Furthermore, the compiler knows nothing about arbitrary C functions, and it doesn’t know how large external C arrays are.

    We can prove that the program is memory safe. We call out to CBMC, a C model-checker developed primarily by Daniel Kröning. This is whole-program analysis, so we have to provide the location of the libraries. We define

    verifying :: IO ()
    verifying =
      verify (name P.++ ".c") (length notesLst * 4 + 3)
        (     "-DCBMC -I/Applications/Arduino.app/Contents/Resources/Java/hardware/arduino/cores/arduino/ "
         P.++ "-I/Applications/Arduino.app/Contents/Resources/Java/hardware/tools/avr/avr-4/include "
         P.++ "--function cbmc")

    which calls cbmc on our generated C program. Let me briefly explain the arguments. First we give the name of the C program.

    Then we say how many times to unroll the loops. This requires a little thinking. We want to unroll the loops enough times to potentially get into a state where we might have an out of bounds array access (recall that the Copilot stream idx generates indexes into the arrays). The length of the C arrays are given by length notesLst. When compiling the Copilot program (calling the module’s main function, a periodic schedule is generated for the program). From the schedule, we can see that idx is updated every fourth pass through the loop. So we unwind it enough loop passes for the counter to have the opportunity to walk off the end of the array, plus a few extra passes for setup. This is a minimum bound; you could of course over-approximate and unroll the loop, say, 1000 times.

    Regarding loop unrolling, remember that #ifdef from the definition of playtone()? We include that to reduce the difficulty of loop unrolling. playtone() gets called on every fourth pass through the main loop, and unrolling both loops is just too much for symbolic model-checking (at least on my laptop). So we give ourselves an informal argument that the loop in playtone() won’t introduce any memory safety violations, and the #ifdef gives us one iteration through the loop if we’re verifying the system. A lot of times with embedded code, this is a non-issue, since loops can just be completely unrolled.

    The -D flag defines a preprocessor macro, and the -I defines a include path. Finally, the --function flag gives the entry point into the program. Because we generated a Wiring program which generates a while(1) loop for us through macro magic, we have to create an explicit loop ourselves for verification purposes.

    If you’re interested in seeing what things look like when they fail, change the idx stream to be

      idx .= [0] ++ (idx + 1)
    

    and cbmc will complain

    Violated property:
      file CopilotSing.c line 180 function __r11
      array `beats' upper bound
      (long int)__1 < 47
    
    VERIFICATION FAILED
    

So that’s it. Happy holidays!


Backseat Driving: Copilot Updates

A lot has been going on since the announcement of Copilot, a Haskell DSL for generating hard real-time C monitors. We’ve presented Copilot a few times, including at Runtime Verification 2010, at a Galois Technical Seminar (video of the talk is here), and at a recent NASA Technical Interchange.

Copilot has had five releases since we originally open-sourced the project.  Recent work has focused on making the language more straightforward and improving Copilot libraries.  But first, let me remind you how to use Copilot: you can compile specs to hard real-time C code, you can interpret them, you can model-check them, and you can generate specs to test the compiler and interpreter—you can see a bit about usage here.

For example, here’s a Copilot specification that generates the Fibonacci sequence (over Word64s) and tests for even numbers:

fib :: Streams
fib = do
  let f = varW64 "f"
  let t = varB "t"
  f .= [0,1] ++ f + (drop 1 f)
  t .= even f
  where even :: Spec Word64 -> Spec Bool
            even w' = w' `mod` 2 == 0

Notice that lists look almost exactly like Haskell lists.

What about something a little more complicated?  Consider the property:

If the temperature rises more than 2.3 degrees within 2 seconds, then the engine has been shut off.

We might use a Copilot specification like the following to express it, assuming that temp and shutoff are C variables being sampled at phases 1 and 2 respectively, and the period of execution is 1 second:

engine :: Streams
engine = do
  -- external vars
  let temp     = extF "temp" 1
  let shutoff  = extB "shutoff" 2
  -- Copilot vars
  let temps    = varF "temps"
  let overTemp = varB "overTemp"
  let trigger  = varB "trigger"
  -- Copilot specification
  temps    .= [0, 0, 0] ++ temp
  overTemp .= drop 2 temps > 2.3 + temps
  trigger  .= overTemp ==> shutoff

Here’s something that I think shows why you want to write your DSLs in Haskell: Haskell gives you a macro language for your DSL… for free.  For example, consider the following (more complicated) property:

“If the engine temperature exeeds 250 degrees, then the engine is shut off within one second, and in the 0.1 second following the shutoff, the cooler is engaged and remains engaged.”

We can more succinctly specify this property using past-time linear temporal logic (ptLTL).  There’s a Copilot library for writing those kind of specs, which can be interspersed with normal Copilot streams—the ptLTL specs are highlighted in blue below.  Again, assume a period of execution of 1 second:

engine :: Streams
engine = do
  -- external vars
  let engineTemp = extW8 "engineTemp" 1
  let engineOff  = extB "engineOff" 1
  let coolerOn   = extB "coolerOn" 1
  -- Copilot vars
  let cnt        = varW8 "cnt"
  let temp       = varB "temp"
  let cooler     = varB "cooler"
  let off        = varB "off"
  let monitor    = varB "monitor"
  -- Copilot specification
  temp    `ptltl` (alwaysBeen (engineTemp > 250))
  cnt     .=      [0] ++ mux (temp && cnt < 10) (cnt + 1) cnt
  off     .=      cnt >= 10 ==> engineOff
  cooler  `ptltl` (coolerOn `since` engineOff)
  monitor .=      off && cooler

Today, I finished updating another feature of Copilot: the ability to send stream values over ports to other components in a distributed system. We had an implementation of this, but it was a bit hacky. Hopefully, it’s a bit less hacky now. For example, consider the following specification:

distrib :: Streams
distrib = do
  -- Copilot vars
  let a = varW8 "a"
  let b = varB "b"
  -- Copilot spec
  a .= [0,1] ++ a + 1
  b .= mod a 2 == 0 
  -- send commands
  send "portA" (port 2) a 1
  send "portB" (port 1) b 2

The blue commands are send commands.  For example, the first command says, “call the C function portA(str, num), where argument str is the value of stream a and num is port number 1.” The port number says who to send it to.

These are just a few of the recent updates. We’re still working on Copilot, so let me know if you have questions or comments.

Interested? Get Copilot on Hackage or GitHub.


Copilot: a DSL for Monitoring Embedded Systems

In case you missed all the excitement on the Galois blog, what follows is a re-post.

Introducing Copilot

Can you write a list in Haskell? Then you can write embedded C code using Copilot. Here’s a Copilot program that computes the Fibonacci sequence (over Word 64s) and tests for even a numbers:


fib :: Streams
fib = do
  "fib" .= [0,1] ++ var "fib" + (drop 1 $ varW64 "fib")
  "t" .= even (var "fib")
    where even :: Spec Word64 -> Spec Bool
          even w = w `mod` const 2 == const 0

Copilot contains an interpreter, a compiler, and uses a model-checker to check the correctness of your program. The compiler generates constant time and constant space C code via Tom Hawkin’s Atom Language (thanks Tom!). Copilot is specifically developed to write embedded software monitors for more complex embedded systems, but it can be used to develop a variety of functional-style embedded code.

Executing

> compile fib "fib" baseOpts

generates fib.c and fib.h (with a main() for simulation—other options change that). We can then run

> interpret fib 100 baseOpts

to check that the Copilot program does what we expect. Finally, if we have CBMC installed, we can run

> verify "fib.c"

to prove a bunch of memory safety properties of the generated program.

Galois has open-sourced Copilot (BSD3 licence). More information is available on the Copilot homepage. Of course, it’s available from Hackage, too.

Flight of the Navigator

Aberdeen Farms entrance

View of the James River.

Pitot tube on the test aircraft.

Our testbed stack: 4 STM32 microcontrollers (ARM Cortex M3s), an SD card for logging data, air pressure sensor, and voltage regulator.

Sebastian installing the stack.

Copilot took its maiden flight in August 2010 in Smithfield, Virginia. NASA rents a private airfield for test flights like this, but you have to get past the intimidating sign posted upon entering the airfield. However, once you arrive, there’s a beautiful view of the James River.

We were flying on a RC aircraft that NASA Langley uses to conduct a variety of Integrated Vehicle Health Management (IVHM) experiments. (It coincidentally had Galois colors!) Our experiments for Copilot were to determine its effectiveness at detecting faults in embedded guidance, navigation, and control software. The test-bed we flew was a partially fault-tolerant pitot tube (air pressure) sensor. Our pitot tube sat at the edge of the wing. Pitot tubes are used on commercial aircraft and they’re a big deal: a number of aircraft accidents and mishaps have been due, in part, to pitot tube failures.

Our experiment consisted of a beautiful hardware stack, crafted by Sebastian Niller of the Technische Universität Ilmenau. Sebastian also led the programming for the stack. The stack consisted of four STM32 ARM Cortex M3 microprocessors. In addition, there was an SD card for writing flight data, and power management. The stack just fit into the hull of the aircraft. Sebastian installed our stack in front of another stack used by NASA on the same flights.

The microprocessors were arranged to provide Byzantine fault-tolerance on the sensor values. One microprocessor acted as the general, receiving inputs from the pitot tube and distributing those values to the other microprocessors. The other microprocessors would exchange their values and perform a fault-tolerant vote on them. Granted, the fault-tolerance was for demonstration purposes only: all the microprocessors ran off the same clock, and the sensor wasn’t replicated (we’re currently working on a fully fault-tolerant system). During the flight tests, we injected (in software) faults by having intermittently incorrect sensor values distributed to various nodes.

The pitot sensor system (including the fault-tolerance code) is a hard real-time system, meaning events have to happen at predefined deadlines. We wrote it in a combination of Tom Hawkin’s Atom, a Haskell DSL that generates C, and C directly.

Integrated with the pitot sensor system are Copilot-generated monitors. The monitors detected

  • unexpected sensor values (e.g., the delta change is too extreme),
  • the correctness of the voting algorithm (we used Boyer-Moore majority voting, which returns the majority only if one exists; our monitor checked whether a majority indeed exists), and
  • whether the majority votes agreed.

The monitors integrated with the sensor system without disrupting its real-time behavior.

We gathered data on six flights. In between flights, we’d get the data from the SD card.

We took some time to pose with the aircraft. The Copilot team from left to right is Alwyn Goodloe, National Institute of Aerospace; Lee Pike, Galois, Inc.; Robin Morisset, École Normale Supérieure; and Sebastian Niller, Technische Universität Ilmenau. Robin and Sebastian are Visiting Scholars at the NIA for the project. Thanks for all the hard work!

There were a bunch of folks involved in the flight test that day, and we got a group photo with everyone. We are very thankful that the researchers at NASA were gracious enough to give us their time and resources to fly our experiments. Thank you!

Finally, here are two short videos. The first is of our aircraft’s takeoff during one of the flights. Interestingly, it has an electric engine to reduce the engine vibration’s effects on experiments.

http://player.vimeo.com/video/15198286

The second is of AirStar, which we weren’t involved in, but that also flew the same day. AirStar is a scaled-down jet (yes, jet) aircraft that was really loud and really fast. I’m posting its takeoff, since it’s just so cool. That thing was a rocket!

http://player.vimeo.com/video/15204969

More Details

Copilot and the flight test is part of a NASA-sponsored project (NASA press-release) led by Lee Pike at Galois. It’s a 3 year project, and we’re currently in the second year.

Even More Details

Besides the language and flight test, we’ve written a few papers:

  • Lee Pike, Alwyn Goodloe, Robin Morisset, and Sebastian Niller. Copilot: A Hard Real-Time Runtime Monitor. To appear in the proceedings of the 1st Intl. Conference on Runtime Verification (RV’2010), 2010. Springer.

This paper describes the Copilot language.

Byzantine faults are fascinating. Here’s a 2-page paper that shows one reason why.

At the beginning of our work, we tried to survey prior results in the field and discuss the constraints of the problem. This report is a bit lengthy (almost 50 pages), but it’s a gentle introduction to our problem space.

Yes, QuickCheck can be used to test low-level protocols.

A short paper motivating the need for runtime monitoring of critical embedded systems.

You’re Still Interested?

We’re always looking for collaborators, users, and we may need 1-2 visiting scholars interested in embedded systems & Haskell next summer. If any of these interest you, drop Lee Pike a note (hint: if you read any of the papers or download Copilot, you can find my email).


Shocking Tell-All Interview on Software Assurance

I was recently interviewed by Flight International magazine, one of the oldest aviation news magazines.  Their reporter, Stephen Trimble, was writing on the Air Force’s Chief Scientist’s recent report stating that new software verification and validation techniques are desperately needed.

Here’s an online copy of the article.


Copilot: A Hard Real-Time Runtime Monitor

I’m the principal investigator on a NASA-sponsored research project investigating new approaches for monitoring the correctness of safety-critical guidance, navigation, and control software at run-time.  We just got a paper accepted at the Runtime Verification Conference on some of our recent work developing a language for writing monitors.  The language, Copilot, is a domain-specific language (DSL) embedded in Haskell that uses the powerful Atom DSL as a back-end.  Perhaps the best tag-line for Copilot is, “Know how to write Haskell lists?  Good; then you’re ready to write embedded software.”

Stay tuned for a software release and updates on a flight-test of our software on a NASA test UAV…  In the meantime, check out the paper!


Twinkle Twinkle Little Haskell

Update Sept 28,2010: the Makefile mentioned below worked fine, except for something having to do with timing.  I was too lazy to track the problem down, but fortunately, I found an scons script (using the scons build system) that I modified to run on Mac OSX, and it works perfectly.  The original script is here—thanks Homin Lee!  The post has been modified appropriately.

Update Oct 1, 2010: Homin Lee has updated the script to work on Mac OSX, so you can just grab the original script now.


It’s been a few months almost a year(!) since John Van Enk showed us how to twinkle (blink) an LED on his Arduino microcontroller using Atom/Haskell.  Since that time, Atom (a Haskell embedded domain-specific language for generating constant time/space C programs) has undergone multiple revisions, and the standard Arduino tool-chain has been updated, so I thought it’d be worthwhile to “re-solve” the problem with something more streamlined that should work today for all your Haskell -> Arduino programming needs.  With the changes to Atom, we can blink a LED with just a couple lines of core logic (as you’d expect given the simplicity of the problem).

For this post, I’m using

If you’ve played with the Arduino, you’ve noticed how nice the integrated IDE/tool-chain is.  Ok, the editor leaves everything to be desired, but otherwise, things just work.  The language is basically C with a few macros and Atmel AVR-specific libraries (the family to which Arduino hardware belongs).

However, if you venture off the beaten path at all—say, trying to compile your own C program outside the IDE—things get messy quickly.  Fortunately, with the scons script, things are a piece of cake.

What we’ll do is write a Haskell program AtomLED.hs and use that to generate AtomLED.c.  From that, the scons script will take care of the rest.

The Core Logic

Here’s the core logic we use for blinking the LED from Atom:

ph :: Int
ph = 40000 -- Sufficiently large number of ticks (the Duemilanove is 16MHz)

blink :: Atom ()
blink = do
  on <- bool "on" True -- Declare a Boolean variable on, initialized to True.

  -- At period ph and phase 0, do ...
  period ph $ phase 0 $ atom "blinkOn" $ do
    call "avr_blink"        -- Call a locally-defined C function, blink().
    on <== not_ (value on)  -- Flip the Boolean.

  period ph $ phase (quot ph 8) $ atom "blinkOff" $ do
    call "avr_blink"
    on <== not_ (value on)

And that’s it!  The blink function has two rules, “blinkOn” and “blinkOff”.  Both rules execute every 40,000 ticks.  (A “tick” in our case is just a local variable that’s incremented, but it could be run off the hardware clock.  Nevertheless, we still know we’re getting nearly constant-time due to the code Atom generates.)  The first rule starts at tick 0, and executes at ticks 40,000, 80,000, etc., while the second starts at tick 40,000/8 = 5000 and executes at ticks 5000, 45,000, 85,000, etc.  In each rule, after calling the avr_blink() C function (we’ll define), it modulates a Boolean upon which blink() depends. Thus, the LED is on 1/8 of the time and off 7/8 of the time. (If we wanted the LED to be on the same amount of time as it is off, we could have done the whole thing with one rule.)

The Details

Really the only other thing we need to do is add a bit of C code around the core logic.  Here’s the listing for the C code stuck at the beginning, written as strings:

[ (varInit Int16 "ledPin" "13") -- We're using pin 13 on the Arduino.
, "void avr_blink(void);"
]

and here’s some code for afterward:

[
"void setup() {"
, " // initialize the digital pin as an output:"
, " pinMode(ledPin, OUTPUT);"
, "}"
, ""
, "// set the LED on or off"
, "void avr_blink() { digitalWrite(ledPin, state.AtomLED.on); }"
, ""
, "void loop() {"
, " " ++ atomName ++ "();"
, "}"
]

The IDE tool-chain expects there to be a setup() and loop() function defined, and it then pretty-prints a main() function from which both are called. The code never returns from loop().

To blink the LED, we call digitalWrite() from avr_blink(). digitalWrite() is provided by the Arduino language.  (In John’s post, he manipulated the port registers directly, which is faster and doesn’t rely on the Arduino libraries, but it’s also lower-level and less portable between Atmel controllers.)  Atom-defined variables are stored in a struct, so state.AtomLED.on references the Atom Boolean variable defined earlier.

Make it Work!

Now just drop the scons script into the directory (the directory must have the same name as the Haskell file, dropping the extension), and run

> runhaskell AtomLED.hs
> scons
> scons upload

And your Haskell should be twinkling your LED. runhaskell AtomLED.hs invokes the Atom compile function to generate a C file and headers; scons invokes the build script to build an ELF image to upload, and scons upload again invokes the compiler to upload to your board.

This should work for any Atom-generated program you want to run on your Arduino (modulo deviations from the configuration I mentioned initially). Also, note the conventions and parameters to set in the scons script.

Post if you have any problems, and I might be able to help. Also, I’d love to package the boilerplate up into a “backend” for Atom, but if you have time, please beat me to it.  Thanks.

Code:


New Group: Functional Programming for Embedded Systems

Are you interested in how functional programming can be leveraged to make embedded-systems programming easier and more reliable?  You are not alone.  For example, check out what’s been happening in just the past couple of years.

Now Tom Hawkins (designer of Atom) has started a Google group, fp-embedded, to discuss these issues.  Please join and post your projects & questions!


An Apologia for Formal Methods

In the January 2010 copy of IEEE Computer, David Parnas published an article, “Really Rethinking ‘Formal Methods’” (sorry, you’ll need an IEEE subscription or purchase the article to access it), with the following abstract:

We must question the assumptions underlying the well-known current formal software development methods to see why they have not been widely adopted and what should be changed.

I found some of the opinions therein to be antiquated, so I wrote a letter to the editor (free content!), which appears in the March 2010 edition.  IEEE also published a response from David Parnas, which you can also access at the letter link above.

I’ll refrain from visiting this debate here, but please have a look at the letters, enjoy the controversy, and do not hesitate to leave a comment!


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